annotate numerics/bar.py @ 104:889728b8d359

minor cleanup
author Jeff Hammel <k0scist@gmail.com>
date Sun, 15 Mar 2015 08:53:30 -0700
parents 067aa27050a3
children 19a5c2fb52bb
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
1 #!/usr/bin/env python
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
2 # -*- coding: utf-8 -*-
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
3
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
4 """
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
5 bar charts using bokeh
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
6
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
7 See:
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
8 - http://bokeh.pydata.org/tutorial/solutions/gallery/olympics.html
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
9 """
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
10
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
11 # imports
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
12 import argparse
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
13 import csv
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
14 import os
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
15 #import pandas as pd
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
16 import sys
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
17 from .read import CSVParser
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
18 from bokeh.charts import Bar
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
19 from bokeh.plotting import *
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
20 from collections import OrderedDict
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
21
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
22 __all__ = ['bar_chart', 'main']
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
23
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
24 def bar_chart(data, output, title=None):
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
25 """create a bar chart"""
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
26
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
27 bar = Bar(data, tools="pan,wheel_zoom,box_zoom,reset,resize")
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
28 bar.filename(output)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
29 bar.width(len(data)*50)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
30 bar.show()
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
31
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
32 class BarChartParser(CSVParser):
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
33 """command line options parser for bar charts"""
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
34 # TODO: upstream to PlotParser
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
35
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
36 def __init__(self, **kwargs):
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
37 kwargs.setdefault('formatter_class', argparse.RawTextHelpFormatter)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
38 kwargs.setdefault('description', __doc__)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
39 CSVParser.__init__(self, **kwargs)
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
40 self.add_argument('-t', '--title', dest='title',
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
41 help="plot title")
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
42
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
43
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
44 def main(args=sys.argv[1:]):
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
45 """CLI"""
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
46
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
47 # parse command line
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
48 parser = BarChartParser()
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
49 options = parser.parse_args(args)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
50
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
51 # parse file
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
52 # data = pd.read_csv(options.input, header=None, names=options.columns, index_col=0)
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
53
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
54 # generate bar chart
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
55 # bar_chart(data, options.output, title=options.title or options.input.name)
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
56
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
57 if __name__ == '__main__':
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
58 main()