annotate numerics/bar.py @ 140:9acea302899a

preparing for d3
author Jeff Hammel <k0scist@gmail.com>
date Mon, 30 Mar 2015 10:45:47 -0700
parents a4e6b6ad6907
children 310290f95787
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
1 #!/usr/bin/env python
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
2 # -*- coding: utf-8 -*-
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
3
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
4 """
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
5 bar charts using bokeh
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
6
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
7 See:
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
8 - http://bokeh.pydata.org/tutorial/solutions/gallery/olympics.html
137
a4e6b6ad6907 cleanup + notes
Jeff Hammel <k0scist@gmail.com>
parents: 118
diff changeset
9 - http://bokeh.pydata.org/en/latest/tutorial/topical.html
140
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
10 - https://gist.github.com/mbostock/7322386
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
11 """
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
12
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
13 # imports
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
14 import argparse
140
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
15 import os
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
16 import sys
117
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
17 import tempfile
115
7fac47bb648e mysteries and more mysteries: bokeh should really be a plugin for this, not the way to do it, but we are porting so lets ignore that and boldly walk forward
Jeff Hammel <k0scist@gmail.com>
parents: 113
diff changeset
18 from .data import transpose
112
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
19 from .manipulate import ManipulationParser
115
7fac47bb648e mysteries and more mysteries: bokeh should really be a plugin for this, not the way to do it, but we are porting so lets ignore that and boldly walk forward
Jeff Hammel <k0scist@gmail.com>
parents: 113
diff changeset
20 from collections import OrderedDict
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
21
107
19a5c2fb52bb add transpose functionality
Jeff Hammel <k0scist@gmail.com>
parents: 104
diff changeset
22 __all__ = ['bar_chart', 'BarChartParser', 'main']
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
23
140
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
24 # template info
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
25 # TODO: own module
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
26 here = os.path.dirname(os.path.abspath(__file__))
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
27 templates = os.path.join(here, 'templates')
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
28 template = os.path.join(here, 'bar.d3.html')
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
29 d3 = os.path.join(here, 'javascript', 'd3.v3.min.js')
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
30
115
7fac47bb648e mysteries and more mysteries: bokeh should really be a plugin for this, not the way to do it, but we are porting so lets ignore that and boldly walk forward
Jeff Hammel <k0scist@gmail.com>
parents: 113
diff changeset
31
117
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
32 def bar_chart(data, output, title=None):
116
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
33 """
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
34 create a bar chart
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
35
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
36 See:
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
37 - http://bokeh.pydata.org/en/latest/tutorial/solutions/gallery/olympics.html
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
38 """
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
39 # TODO: abstract this to a plot class
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
40
fe820a3afa48 wip but we do need that new dependency
Jeff Hammel <k0scist@gmail.com>
parents: 115
diff changeset
41
112
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
42 class BarChartParser(ManipulationParser):
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
43 """command line options parser for bar charts"""
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
44 # TODO: upstream to PlotParser
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
45
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
46 def __init__(self, **kwargs):
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
47 kwargs.setdefault('description', __doc__)
112
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
48 ManipulationParser.__init__(self, **kwargs)
104
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
49 self.add_argument('-t', '--title', dest='title',
889728b8d359 minor cleanup
Jeff Hammel <k0scist@gmail.com>
parents: 103
diff changeset
50 help="plot title")
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
51
117
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
52 def plot_filename(self):
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
53 """determine the plot filename"""
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
54 # this is a STUB
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
55 # in reality, this should come from -o, --output
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
56 # if applicable, or, should be determined from
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
57 # the plot --title, or should be eg
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
58 # '20150315203424.html'
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
59 # we are doing this right nowe to work around the fact
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
60 # that bokeh, in particular, will just cry if you
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
61 # don't set this
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
62 return 'foo.html'
0adf95bdda00 what a waste of time and i still dont have a plot
Jeff Hammel <k0scist@gmail.com>
parents: 116
diff changeset
63
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
64
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
65 def main(args=sys.argv[1:]):
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
66 """CLI"""
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
67
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
68 # parse command line
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
69 parser = BarChartParser()
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
70 options = parser.parse_args(args)
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
71
112
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
72 # process data
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
73 data = parser.typed_data()
7578313b9fbf hook up basic plumbing
Jeff Hammel <k0scist@gmail.com>
parents: 107
diff changeset
74
115
7fac47bb648e mysteries and more mysteries: bokeh should really be a plugin for this, not the way to do it, but we are porting so lets ignore that and boldly walk forward
Jeff Hammel <k0scist@gmail.com>
parents: 113
diff changeset
75 # ensure a mapping is given
140
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
76 if len(data) != 1:
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
77 raise NotImplementedError("TODO")
115
7fac47bb648e mysteries and more mysteries: bokeh should really be a plugin for this, not the way to do it, but we are porting so lets ignore that and boldly walk forward
Jeff Hammel <k0scist@gmail.com>
parents: 113
diff changeset
78
113
f9900883db2e hook it up and break it down
Jeff Hammel <k0scist@gmail.com>
parents: 112
diff changeset
79 # generate bar chart
140
9acea302899a preparing for d3
Jeff Hammel <k0scist@gmail.com>
parents: 137
diff changeset
80 # bar_chart(data, parser.plot_filename(), title=options.title)
103
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
81
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
82
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
83 if __name__ == '__main__':
067aa27050a3 limping along towards bar charts
Jeff Hammel <k0scist@gmail.com>
parents:
diff changeset
84 main()